Package: cauphy
Version: 1.0.3
Title: Trait Evolution on Phylogenies Using the Cauchy Process
Description: The Cauchy Process can model pulsed continuous trait
        evolution on phylogenies. The likelihood is tractable, and is
        used for parameter inference and ancestral trait
        reconstruction. See Bastide and Didier (2023)
        <doi:10.1093/sysbio/syad053>.
Authors@R: c(
    person("Gilles", "Didier", email = "gilles.didier@free.fr", role = c("aut", "cph")),
    person("Paul", "Bastide", email = "paul.bastide@cnrs.fr", role = c("aut", "cre")))
Depends: R (>= 3.5), ape (>= 5.5)
Imports: methods, robustbase, phylolm (>= 2.6.5), nloptr, pracma,
        foreach, doParallel, HDInterval
Suggests: covr, knitr, rmarkdown, spelling, geiger, testthat (>= 3.0.0)
License: GPL (>= 3)
Encoding: UTF-8
RoxygenNote: 7.3.2
Config/testthat/edition: 3
LazyData: true
VignetteBuilder: knitr
URL: https://gilles-didier.github.io/cauphy/
BugReports: https://github.com/gilles-didier/cauphy/issues
Language: en-US
Config/pak/sysreqs: cmake
Repository: https://gilles-didier.r-universe.dev
Date/Publication: 2024-10-01 17:01:34 UTC
RemoteUrl: https://github.com/gilles-didier/cauphy
RemoteRef: HEAD
RemoteSha: 5d65b3d1b456d61810f2c78442cddf4a8de1aa8a
NeedsCompilation: yes
Packaged: 2026-06-18 11:19:21 UTC; root
Author: Gilles Didier [aut, cph],
  Paul Bastide [aut, cre]
Maintainer: Paul Bastide <paul.bastide@cnrs.fr>