Package: cauphy 1.0.2

Paul Bastide

cauphy: Trait Evolution on Phylogenies Using the Cauchy Process

The Cauchy Process can model pulsed continuous trait evolution on phylogenies. The likelihood is tractable, and is used for parameter inference and ancestral trait reconstruction. See Bastide and Didier (2023) <doi:10.1093/sysbio/syad053>.

Authors:Gilles Didier [aut, cph], Paul Bastide [aut, cre]

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Bug tracker:https://github.com/gilles-didier/cauphy/issues

On CRAN:

10 exports 1 stars 1.10 score 20 dependencies 3 scripts 211 downloads

Last updated 10 months agofrom:225f979c68. Checks:OK: 8 NOTE: 1. Indexed: yes.

Exports:ancestralcauphylmcompute_vcovfitCauchyincrementlogDensityTipsCauchyplot_asrposteriorDensityAncestralposteriorDensityIncrementrTraitCauchy

Dependencies:apecodetoolsDEoptimRdigestdoParallelforeachfuturefuture.applyglobalsHDIntervaliteratorslatticelistenvnlmenloptrparallellyphylolmpracmaRcpprobustbase